| Time
| Title
| Speaker
| Resources
|
| 8:45 - 9:30
| Minibus/Taxis to pick attendees up from hotels and bring to Campus
|
| 9:30 - 10:00
| Coffee is served outside the training room
|
| 10:00 - 10:10
| Welcome and Introduction to the Workshop
| Jonathan Warren
|
|
| 10:10 - 11:10
| DAS - Technical Introduction
| Andy Jenkinson
| Powerpoint 2008
Powerpoint 1997
PDF
|
| 11:10 - 11:30
| The DAS Registration Service
| Jonathan Warren
| The Registry
|
| 11:30 - 12:15
| Putting it all together
| Rob Finn
| presentation
|
| 12:15 - 13:15
| Lunch break
|
| 13:15 - 15:10
| Hands On Tutorial - Setting up a DAS Server and creating a DAS Client. The room will be split into two groups: one for Java and one for Perl.
| Jonathan Warren and Andy Jenkinson
| Java server: Dazzle tutorial
Java client: Dasobert tutorial
Perl server: Bio::Das::ProServer tutorial
Perl client: Bio::Das::Lite tutorial
|
| 15:10 - 15:30
| Coffee break
|
| 15:30 - 16:30
| Hands On Tutorial - continued
|
| Time
| ProjectName
| Speaker
| Presentation
|
| 09:30 - 10:00
| Arrival - Tea, Coffee.
|
| 10:00
| Opening talk
| Tim Hubbard
| presentation
|
| 10:20
| Collaborative Annotation tool (MaDAS)
| Victor de la Torre
| presentation
|
| 10:40
| Jalview / VAMSAS
| Jim Procter / Geoff Barton
| presentation
|
| 11:00
| Pfam
| Rob Finn
| presentation
|
| 11:20
| DASgenexp
| Bernat Gel
| presentation
|
| 11:40
| Dasty2
| Rafael Jimenez
| presentation
|
| 12:00
| EMBOSS as an efficient DAS annotation source
| Peter Rice, Mahmut Uludag
| presentation
|
| 12:15-13:30
| Lunch break
|
| 13:30
| Ensembl
| James Smith
| presentation
|
| 13:50
| Integration of info on gene expression and its temporal and spatial localization
| Jose Ramon Macias
| presentation
|
| 14:10
| DAS - writeback
| Gustavo Salazar
| presentation
|
| 14:30
| Interaction DAS
| Hagen Blankenburg
| presentation
|
| 14:50
| DAS for ENCODE data coordination
| Felix Kokocinski
| pdf
|
| 15:10-15:30
| coffee break
|
| 15:30
| A web resource for selecting epitopes for antibodies
| Niall Haslam
| presentation
|
| 15:50
| DAS Searches
| Andreas Prlic
| presentation
|
| 16:10
| A karyotype DAS client
| Rafael Jimenez
| presentation
|
| 16:30
| DASher, a standalone Java client for DAS protein sequence features
| David Messina
| presentation pdf
|
| 16:50
| Data Federation - BioMart & DAS
| Syed Haider
| presentation
|
| 17:10
| Trellis DAS2 framework- which includes the DAS1-->DAS2 proxy and alpha UCSC DAS2 server
| Gregg Helt
| presentation
|
| 17:30
| Discussion/talk about activity organisation of next day - preliminary groups and chairs of groups
|
|
|
